Target Outcome

Volumetric reconstruction of a tissue of interest:

as an image volume, and
as a surface representation

Prerequisites

Include(Infrastructure/AuxiliarySoftware, "Infrastructure", 2, from="= Image Analysis & Segmentation =", to="= Geometry & Mesh Generation & Manipulation =")

Previous Protocols

For more details, see ["Specifications/ExperimentationAnatomicalImaging"].

Protocols

Input

Set(s) of MRI in DICOM format

Procedures

-- ["aerdemir"] DateTime(2013-12-17T13:25:32Z) This section may list general purpose procedures and alternatives to utilize the same input to reach the same output. Procedures optimized for specific tissues should also be provided in here.

Output

Volume of tissue of interest as a binary image aligned with original MRI coordinate system (raw, without filtering and smoothing)
Surface representation of tissue of interest in STL format in MRI coordinate system (raw, without filtering and smoothing)